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Hey.
I just came across this plugin, and thought that you might find it interesting: http://wordpress.org/extend/plugins/taxonomy-terms-order/

php speedy plugin :
// in config.php change the following :
## On or off
$compress_options['active'] = "0"; // deactivate if you want to log in by netpix
// if you turned this to 1 the...

I've just tested your problem on a test site the speedy plugin, it seemd to work fine with theses option (see config.php in libs\php_speedy\config.php)
mine is that one if it can helps :